1.1 (Dec 21, 2020)¶

New Features¶

utilipy.tests.helper¶

BaseClassDependentTests: Unit tests for classes are often best organized into a class structure. This is a baseclass for these unit-tests so that they accept an argument to the class specifying the class to test. [#27]
PDB and close-to-zero safe element-wise |Quantity| array comparisons [#27]
- phase-wrap support

utilipy.utils.pickle¶

Added configuration for using dill over pickle [#26] Changed default from True to False

utilipy.decorators¶

API Changes¶

adopted Astropy’s configuration system, removing the old config module.
- utilipy.cfg sets the template
- each module has the specific config code in the setup_package.py (preferred), __init__.py, or the relevant python file.
Rename data_utils/shuffle to data data_utils/shuffler [#17]
Deprecate custom format_doc in favor or Astropy’s [#17]
Changed default from True to False in dill-over-pickle config [#26]
Change argument dtypeDecoratorBase for iterating over all function arguments from ‘all’ to Ellipsis [#19]

Bug Fixes¶

Module ipython is not imported to top-level namespace [#20] because this is not always used in an ipython environment.

Other Changes and Additions¶

PR template [#12]
Adopt pre-commit: [#13]
- isort
- black
- flake8
- check-added-large-files
- check-case-conflict
- check-merge-conflict
- check-symlinks
- check-toml
- check-yaml
- debug-statements
- detect-private-key
- end-of-file-fixer
- fix-encoding-pragma
- requirements-txt-fixer
- trailing-whitespace
CI Workflows [#16]
- dependabot
- labeler
- ci_cron
- ci_tests
- pre-commit [#22]
- Auto-publish to PyPI on release [#21]
Remove Travis [#16]
Clean code spacing and import labels [#17]

1.0.1 (2020-04-05)¶

Bug Fixes¶

fixed import inspect in utilipy.decorators.func_io from buit-in to utilipy’s inspect module (utilipy.utils.inspect) since the function store_function_input needs `fuller_signature <https://utilipy.readthedocs.io/en/latest/api/utilipy.decorators.store_function_input.html#utilipy.decorators.store_function_input>`_.

1.0 (2020-04-01)¶

New Features¶

Version 1.0 is a reboot of utilipy, so all features can be considered new.

utilipy.init¶

Set up top-level namespace: help, online_help, wraps from util.functools.wraps, LogFile from util.logging, config from configurations, and ObjDict from util.collections.
Also import all the subpackages:
- astro
- constants
- data_utils
- decorators
- imports
- ipython
- math
- plot
- scripts

utilipy.config¶

utilipy has a config file .utilipyrc that governs import verbosity, warnings verbosity, and what type of frozen constants to use.
all the configurations can be get / set during run-time.
there is a with version of all the configurations, for running code with a temporarily changed configurations.

utilipy.astro¶

distance modulus functions (distanceModulus, distanceModulus_distance, distanceModulus-magnitude)
angular separation function (max_angular_separation)
parralax functions (parallax, parallax_angle, parallax_distance)
fast and SkyCoord versions of these functions

utilipy.astro.instruments¶

filter transformation functions
MegaCam to PanSTARRS

utilipy.constants¶

Astropy constants, with a frozen version for reproducibility.

float versions of the constants accessible through values module this includes frozen version for reproducibility to access frozen version, set frozen-constants=True in utilipy config.

FrozenConstants for frozen constants
ConstantsValues for the values of constants.

utilipy.data_utils¶

idxDecorator to control whether a fnction returns boolean arrays or indices.
inRange: multidimensional box selection.
outRange: multidimensional box exclusion.
ioRange: multidimensional box selection and exclusion.
ellipse: elliptical selection of data in many dimensions.
circle: circular selection of data in many dimensions.

utilipy.data_utils.fitting¶

scipy_residual_to_lmfit decorator to make scipy residual functions compatible with lmfit.

utilipy.decorators¶

Decorators

utilipy.decorators.baseclass¶

A set of baseclasses to make improved decorators. This module requires further testing.

utilipy.decorators.docstrings¶

astropy’s “format_doc”

utilipy.decorators.func_io¶

Function input / output.

function store_function_input to store all the input to a function as a BoundArgument
function add_folder_backslash to add a backslash to directory path inputs.
dtypeDecoratorMaker function to make a dtype decorator.
dtypeDecorator function to ensure arguments are type dtype.
boolDecorator, intDecorator, floatDecorator, strDecorator, ndarrayDecorator, ndfloat64Decorator, which enforce their respective dtypes.

utilipy.imports¶

This module provides a variety of files that can be *-imported to provide basic set of imports.

The quick imports are base_imports, extended_imports, astropy_imports, matplotlib_imports, galpy_imports and amuse_imports.

utilipy.imports.base¶

helper function base_imports_help

Base imports

os, sys, time, pdb, warnings,

numpy -> np, scipy,

tqdm -> TQDM, tqdm, .tqdm_notebook -> tqdmn

IPython imports

display, Latex, Markdown, set_trace,

printmd, printMD, printltx, printLaTeX,

set_autoreload, aimport,

run_imports, import_from_file,

add_raw_code_toggle

utilipy imports

LogFile

ObjDict

utilipy.imports.extended¶

helper function extended_imports_help

Numpy imports

linalg.norm

Scipy imports

stats.binned_statistic->binned_stats

utilipy.imports.matplotlib¶

helper function matplotlib_imports_help

Matplotlib imports

pyplot->plt

matplotlib->mpl, .cm, .colors

mpl_toolkits.mplot3d.Axes3D

utilipy imports

ipython.plot.configure_matplotlib

utilipy.imports.plotly¶

helper function plotly_imports_help

plotly imports

plotly

express -> px

graph_objs -> go

io -> pio

subplots -> make_subplots

utilipy.imports.astropy¶

helper function astropy_imports_help

Astropy imports

units->u,

coordinates->coords, SkyCoord,

table.Table, QTable

visualization.quantity_support, astropy_mpl_style

utilipy.imports.galpy¶

helper function galpy_imports_help

Galpy imports

potential, .MWPotential2014

galpy.orbit.Orbit

galpy.util: bovy_conversion, bovy_coords

utilipy.imports.amuse¶

helper function amuse_imports_help

imports amuse, amuse.lab, amuse.units.units, amuse.units.constants, amuse.couple.bridge
provides a help function, amuse_imports_help

utilipy.ipython¶

Functions for interacting with the IPython environment. If in the IPython, sets the ast_node_interactivity to “all” and configures matplotlib, via configure_matplotlib, to an inline backend and retina resolution.

loads into the top-level namespace:

help function
modules: autoreload , imports, notebook, plot, printing
functions: set_autoreload, aimport, run_imports, import_from_file, add_raw_code_toggle, configure_matplotlib, printMD, printLTX

utilipy.ipython.autoreload¶

If in an IPython environment, sets the autoreload state to 1 (autoreload anything imported by aimport).

set_autoreload function to change the global imports setting.
aimport for autoreloading individual modules

utilipy.ipython.imports¶

Module for running utilipy.imports in an IPython environment.

import_from_file function to run any import file, from utilipy or a custom file.
run_imports function to import a file using IPython magic. Uses import_from_file on custom files. Has built-in options for a set of basic imports (by keyword base), extended imports (by keyword extended), astropy, matplotlib, plotly, galpy, and amuse import sets by the respective keywords.

utilipy.ipython.notebook¶

Functions for Jupyter notebook / lab / hub.

add_raw_code_toggle function to show/hide code cells when Notebook is exported to HTML

utilipy.ipython.plot¶

configure_matplotlib function to control plotting in an IPython environment.

utilipy.ipython.printing¶

printMD function to print in Markdown.
printLTX function to print in Latex.

utilipy.math¶

quadrature, arguments summed in quadrature.

utilipy.plot¶

created folder, nothing implemented yet. See What’s Planned for utilipy?.

utilipy.scripts¶

created folder, nothing implemented yet. See What’s Planned for utilipy?.

utilipy.utils¶

from .logging import LogPrint, LogFile
from .collections import ObjDict

from . import functools, pickle

# import top level packages
from . import (
    collections,
    doc_parse_tools,
    logging,
    metaclasses,
)

utilipy.utils.exceptions¶

utilipyWarning
utilipyWarningVerbose

utilipy.utils.functools¶

makeFunction: make a function from an existing code object.
copy_function: Copy a function.
update_wrapper: this overrides the default functools update_wrapper and adds signature and docstring overriding
wraps: overrides the default functools update_wrapper and adds signature and docstring overriding

utilipy.utils.inspect¶

added FullerArgSpec which better separates parts of a signature, like arguments with and without defaults. Also a FullerSignature object which has much finer control over signatures and itself appears to have the signature of the function to which it is a signature.

POSITIONAL_ONLY
POSITIONAL_OR_KEYWORD
VAR_POSITIONAL
KEYWORD_ONLY
VAR_KEYWORD
_void
_empty
_placehold
_is_empty
_is_void
_is_placehold
_is_placeholder
FullerArgSpec
getfullerargspec
get_annotations_from_signature
get_defaults_from_signature
get_kwdefaults_from_signature
get_kwonlydefaults_from_signature
get_kinds_from_signature
modify_parameter
replace_with_parameter
insert_parameter
prepend_parameter
append_parameter
drop_parameter
FullerSignature
fuller_signature

utilipy.utils.pickle¶

dump and load many objects

utilipy.utils.string¶

FormatTemplate with string supporting format, syntax.

utilipy.utils.typing¶

array_like: typing.Sequence

utilipy.utils.logging¶

Basic loggers that can both print and/or record to a file.

LogPrint: print logger
LogFile: This class uses open

utilipy.utils.doc_parse_tools¶

Docstring inheritance-style implementations. Supports numpy and google docstrings.

To implement your own inheritance file, simply write a function that fits the template

def your_style(prnt_doc, child_doc):
    ''' Merges parent and child docstrings

        Parameters
        ----------
        prnt_cls_doc: Optional[str]
        child_doc: Optional[str]

        Returns
        ------
        Optional[str]
            The merged docstring that will be utilized.'''
    return final_docstring

and log this using custom_inherit.add_style(your_style). To permanently save your function

define your function within custom_inherit/_style_store.py
log it in custom_inherit.style_store.__all__.

utilipy.utils.collections¶

ObjDict: Dictionary-like object intended to store information. Instantiated with a name (str)

API Changes¶

Everything

Pre 1.0¶

The package formerly known as astroPHD. Many of the features in v1.0 were present here, but poorly documented and not in Pypi.

API Changes¶

N/A

Bug Fixes¶

N/A

Other Changes and Additions¶

N/A

Navigation

1.1 (Dec 21, 2020)¶

New Features¶

utilipy.tests.helper¶

utilipy.utils.pickle¶

utilipy.decorators¶

API Changes¶

Bug Fixes¶

Other Changes and Additions¶

1.0.1 (2020-04-05)¶

Bug Fixes¶

1.0 (2020-04-01)¶

New Features¶

utilipy.__init__¶

utilipy.config¶

utilipy.astro¶

utilipy.astro.instruments¶

utilipy.constants¶

utilipy.data_utils¶

utilipy.data_utils.fitting¶

utilipy.decorators¶

utilipy.decorators.baseclass¶

utilipy.decorators.docstrings¶

utilipy.decorators.func_io¶

utilipy.imports¶

utilipy.imports.base¶

utilipy.imports.extended¶

utilipy.imports.matplotlib¶

utilipy.imports.plotly¶

utilipy.imports.astropy¶

utilipy.imports.galpy¶

utilipy.imports.amuse¶

utilipy.ipython¶

utilipy.ipython.autoreload¶

utilipy.ipython.imports¶

utilipy.ipython.notebook¶

utilipy.ipython.plot¶

utilipy.ipython.printing¶

utilipy.math¶

utilipy.plot¶

utilipy.scripts¶

utilipy.utils¶

utilipy.utils.exceptions¶

utilipy.utils.functools¶

utilipy.utils.inspect¶

utilipy.utils.pickle¶

utilipy.utils.string¶

utilipy.utils.typing¶

utilipy.utils.logging¶

utilipy.utils.doc_parse_tools¶

utilipy.utils.collections¶

API Changes¶

Pre 1.0¶

API Changes¶

Bug Fixes¶

Other Changes and Additions¶

utilipy.init¶